gmso
stable
Design Principles
Data Structures in GMSO
Formats
External
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Using GMSO with Docker
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gmso
Index
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Index
A
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B
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C
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D
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E
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F
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G
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I
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M
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N
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O
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P
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R
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T
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U
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V
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W
A
add_connection() (gmso.Topology method)
add_site() (gmso.Topology method)
Angle (class in gmso)
angle_type (gmso.Angle property)
AngleType (class in gmso)
Atom (class in gmso)
atom_class_groups (gmso.ForceField property)
atom_type (gmso.Atom property)
atomclass (gmso.AtomType property)
AtomType (class in gmso)
B
Bond (class in gmso)
bond_type (gmso.Bond property)
BondType (class in gmso)
C
charge (gmso.Atom property)
(gmso.AtomType property)
clone() (gmso.Atom method)
(gmso.AtomType method)
connection_type (gmso.Angle property)
(gmso.Bond property)
(gmso.Improper property)
D
definition (gmso.AtomType property)
description (gmso.AtomType property)
Dihedral (class in gmso)
DihedralType (class in gmso)
doi (gmso.AtomType property)
E
element (gmso.Atom property)
equivalent_members() (gmso.Angle method)
(gmso.Bond method)
(gmso.Dihedral method)
(gmso.Improper method)
F
ForceField (class in gmso)
from_mbuild() (in module gmso.external)
from_parmed() (in module gmso.external)
from_xml() (gmso.ForceField class method)
G
get_parameters() (gmso.ForceField method)
get_potential() (gmso.ForceField method)
group_angle_types_by_expression() (gmso.ForceField method)
group_atom_types_by_expression() (gmso.ForceField method)
group_bond_types_by_expression() (gmso.ForceField method)
group_dihedral_types_by_expression() (gmso.ForceField method)
group_improper_types_by_expression() (gmso.ForceField method)
group_pairpotential_types_by_expression() (gmso.ForceField method)
I
Improper (class in gmso)
improper_type (gmso.Improper property)
ImproperType (class in gmso)
is_valid_charge() (gmso.Atom class method)
is_valid_mass() (gmso.Atom class method)
M
mass (gmso.Atom property)
(gmso.AtomType property)
member_types (gmso.BondType property)
(gmso.ImproperType property)
model_computed_fields (gmso.Angle attribute)
(gmso.AngleType attribute)
(gmso.Atom attribute)
(gmso.AtomType attribute)
(gmso.Bond attribute)
(gmso.BondType attribute)
(gmso.Dihedral attribute)
(gmso.DihedralType attribute)
(gmso.Improper attribute)
(gmso.ImproperType attribute)
(gmso.PairPotentialType attribute)
N
non_element_types (gmso.ForceField property)
O
overrides (gmso.AtomType property)
P
PairPotentialType (class in gmso)
R
read_gro() (in module gmso.formats)
read_xyz() (in module gmso.formats)
restraint (gmso.Angle property)
(gmso.Atom property)
(gmso.Bond property)
(gmso.Dihedral property)
T
to_mbuild() (in module gmso.external)
to_openmm() (in module gmso.external)
to_xml() (gmso.ForceField method)
Topology (class in gmso)
U
update_topology() (gmso.Topology method)
V
validate_charge() (gmso.AtomType class method)
validate_mass() (gmso.AtomType class method)
W
write_gro() (in module gmso.formats)
write_gsd() (in module gmso.formats)
write_lammpsdata() (in module gmso.formats)
write_xyz() (in module gmso.formats)
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